modelzoo.transformers.data_processing.scripts.pubmed.preprocess.TextFormatting.TextFormatting#

class modelzoo.transformers.data_processing.scripts.pubmed.preprocess.TextFormatting.TextFormatting[source]#

Bases: object

Parameters

pubmed_path (str) – Path to folder containing PubMed files

:param str output_folder : Path to where the txt file to be written :param Optional[int] filesize_limit: Max size of each text file :param Optional[bool] recursive: Flag if true, searches for nxml/xml files recursively within subfolders

Methods

merge

merge_abstracts

merge_fulltext

__init__(pubmed_path, output_filename, filesize_limit=5000000000, recursive=False)[source]#
Parameters

pubmed_path (str) – Path to folder containing PubMed files

:param str output_folder : Path to where the txt file to be written :param Optional[int] filesize_limit: Max size of each text file :param Optional[bool] recursive: Flag if true, searches for nxml/xml files recursively within subfolders

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